Modifying Structure

9.5. Modifying Structure

If a dataframe has an inconvenient structure, it can be difficult to do the analysis that we want. The wrangling process often reshapes the data frame in some way to make the analysis easier and more natural. These changes can simply take a subset of the rows and/or columns from the table or change the table’s granularity in a more fundamental way. In this section, we use the techniques from Chapter 6 to show how to modify structure.

Simplify Structure

If a data frame has features that are not needed in our analysis then we may want to drop these extraneous columns to make handling the data frame easier. Or, if we want to focus on a particular period of time or geographic area we may want to take a subset of the rows (subsetting is covered in Chapter 6). In Chapter 8, we read into our data frame a small set of features from the hundreds available in the DAWN survey because we were interested in understanding the patterns of type of ER visit by demographics of the patient. Later, in Chapter 10, we restrict an analysis of home sale prices to one year and a few cities in an effort to reduce the impact of inflation and to better study the effect of location on sale price.

Adjust Granularity

In an earlier example in this chapter, CO2 measurements were aggregated from monthly averages to yearly averages in order to better visualize annual trends. In the next section, we provide another example where we aggregate violation-level data to the inspection-level so that it can be combined with the restaurant inspection scores. In both of these examples, we adjust the granularity of the data frame to work with a coarser granularity by grouping together records and aggregating values.

With the CO2 measurements, we grouped the monthly values from the same year and then averaged them. Other common aggregations of a group are the number records, sum, minimum, maximum, and first or last value in the group. The details of adjusting granularity of pandas data frames can be found in Chapter 6, including how to group by multiple column values.

At times a dataset might have mixed granularity, where records are at different levels of detail. A common case is in data provided by government agencies where data at the county and state levels are included in the same file. When this happens, we usually want to split the data frame into two, one at the county level and the other at the state level. This makes a county level and state level analyses much easier, even feasible, to perform.

Reshape

Data, especially from government sources, can be shared as pivot tables. These wide tables have data values as column names, and are often difficult to use in analysis. We may need to reshape them into a long form. Figure 9.2 depicts the same data stored in both wide and long data tables1.

../../_images/wide-vs-long.svg

Fig. 9.2 An example of a wide data table (top) and a long data table (bottom). Both tables contain the same data. Each row of the wide data table maps to three rows in the long data table, as highlighted in the tables. Notice that in the wide data table, each row has three values, one for each month. In the long data table, each row only has a value for one month. Long data tables are generally easier to aggregate for future analysis.

To demonstrate, we can reshape the CO2 data into a wide data frame that is like a pivot table in shape. There is a column for each month and a row for each year.

co2_pivot = pd.pivot_table(
    co2[10:34],
    index='Yr',   # Column to turn into new index
    columns='Mo',  # Column to turn into new columns
    values='Avg') # Column to aggregate 

co2_wide = co2_pivot.reset_index()

display_df(co2_wide, cols=10)
Mo Yr 1 2 3 4 ... 8 9 10 11 12
0 1959 315.62 316.38 316.71 317.72 ... 314.80 313.84 313.26 314.8 315.58
1 1960 316.43 316.97 317.58 319.02 ... 315.91 314.16 313.83 315.0 316.19

2 rows × 13 columns

The column headings are months, and the cell values in the grid are the CO2 monthly averages. We can turn this data frame back into a long, aka tall, data frame, where the column names become a feature, called month, and the values in the grid are reorganized into a second feature, called average.

co2_long = co2_wide.melt(id_vars=['Yr'],
                         var_name='month',
                         value_name='average')

display_df(co2_long, rows=4)
Yr month average
0 1959 1 315.62
1 1960 1 316.43
... ... ... ...
22 1959 12 315.58
23 1960 12 316.19

24 rows × 3 columns

Notice that the data has been recaptured in its original shape (although the rows are not in their original order). Wide-form data is more common when we expect readers to look at the data table itself, like in an economics article or news story. But long-form data is more useful for data analysis. For instance, co2_long lets us write short pandas code to group by either year or month, while the wide-form data makes it difficult to group by year. The .melt() method is particularly useful for converting wide-form into long-form data.

These structural modifications have focused on a single table. However, we often want to combine information that is spread across multiple tables. In the next section, we combine the techniques introduced in this chapter to wrangle the restaurant inspection data and address joining tables.


1

Long form data is also frequently called tidy data. See Tidy Data by Whickam.